OMAT2P006840
<html><body><title>OMAT2P006840</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200068400000i/OMAT2P006840.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200068400000i/OMAT2P006840.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200068400000i/OMAT2P006840.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100118600000i">OMAT1P011860</a></td><td>0.940144</td><td>-</td><td>AT1G34160</td><td>pentatricopeptide (PPR) repeat-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300130400000i">OMAT3P013040</a></td><td>0.938161</td><td>-</td><td>AT3G49240</td><td>emb1796 (embryo defective 1796)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400010800000i">OMAT4P001080</a></td><td>0.936272</td><td>-</td><td>AT4G02820</td><td>pentatricopeptide (PPR) repeat-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100112200000i">OMAT1P011220</a></td><td>0.933655</td><td>-</td><td>AT1G31970</td><td>STRS1 (STRESS RESPONSE SUPPRESSOR 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500134300000i">OMAT5P013430</a></td><td>0.933311</td><td>-</td><td>AT5G47455</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500108300000i">OMAT5P010830</a></td><td>0.929335</td><td>-</td><td>AT5G39960</td><td>GTP-binding family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200084800000i">OMAT2P008480</a></td><td>0.92922</td><td>-</td><td>AT2G34357</td><td>binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500107800000i">OMAT5P010780</a></td><td>0.929201</td><td>-</td><td>AT5G39840</td><td>ATP-dependent RNA helicase, mitochondrial, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100019700000i">OMAT1P001970</a></td><td>0.929103</td><td>-</td><td>AT1G06220</td><td>MEE5 (MATERNAL EFFECT EMBRYO ARREST 5)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100020300000i">OMAT1P002030</a></td><td>0.928944</td><td>-</td><td>AT1G06380</td><td>ribosomal protein-related</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201046400000i">OMAT2P104640</a></td><td>-0.758094</td><td>-</td><td>AT2G25450</td><td>2-oxoglutarate-dependent dioxygenase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300123000000i">OMAT3P012300</a></td><td>-0.740836</td><td>-</td><td>AT3G47540</td><td>chitinase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101106700000i">OMAT1P110670</a></td><td>-0.733112</td><td>-</td><td>AT1G34220</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200052800000i">OMAT2P005280</a></td><td>-0.717401</td><td>-</td><td>-</td><td>-</td><td>AT2G25450</td><td>2-oxoglutarate-dependent dioxygenase, putative</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401029300000i">OMAT4P102930</a></td><td>-0.709486</td><td>-</td><td>AT4G13460</td><td>SUVH9</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401106300000i">OMAT4P110630</a></td><td>-0.701486</td><td>-</td><td>AT4G35830</td><td>aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301127100000i">OMAT3P112710</a></td><td>-0.699985</td><td>-</td><td>AT3G53420</td><td>PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301127150000i">OMAT3P112715</a></td><td>-0.699347</td><td>-</td><td>AT3G53420</td><td>PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201042500000i">OMAT2P104250</a></td><td>-0.697686</td><td>-</td><td>AT2G23810</td><td>TET8 (TETRASPANIN8)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301129100000i">OMAT3P112910</a></td><td>-0.696118</td><td>-</td><td>AT3G53990</td><td>universal stress protein (USP) family protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200068400000i/OMAT2P006840-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 3.31e-26</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>3.31e-26 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>15/200</td><td>6.78</td><td>9.78e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0009790</td><td>embryonic development</td><td>13/200</td><td>4.92</td><td>5.05e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009793</td><td>embryonic development ending in seed dormancy</td><td>10/200</td><td>4.36</td><td>2.18e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010154</td><td>fruit development</td><td>11/200</td><td>3.85</td><td>3.41e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0007275</td><td>multicellular organismal development</td><td>24/200</td><td>2.26</td><td>6.46e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0048316</td><td>seed development</td><td>10/200</td><td>3.67</td><td>1.03e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>20/200</td><td>2.35</td><td>1.34e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>15/200</td><td>2.72</td><td>1.46e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0022414</td><td>reproductive process</td><td>15/200</td><td>2.49</td><td>3.97e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0048608</td><td>reproductive structure development</td><td>13/200</td><td>2.67</td><td>4.29e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006996</td><td>organelle organization</td><td>10/200</td><td>3.00</td><td>5.80e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0048856</td><td>anatomical structure development</td><td>19/200</td><td>2.12</td><td>6.93e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>14/200</td><td>2.37</td><td>9.61e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>34/200</td><td>1.67</td><td>1.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>14/200</td><td>1.93</td><td>6.51e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043229</td><td>intracellular organelle</td><td>104/200</td><td>2.25</td><td>1.54e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>36/200</td><td>5.63</td><td>5.17e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>107/200</td><td>2.10</td><td>6.85e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>109/200</td><td>2.05</td><td>1.70e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044444</td><td>cytoplasmic part</td><td>83/200</td><td>2.39</td><td>2.52e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0005737</td><td>cytoplasm</td><td>85/200</td><td>2.27</td><td>2.09e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0043231</td><td>intracellular membrane-bounded organelle</td><td>92/200</td><td>2.09</td><td>1.19e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043227</td><td>membrane-bounded organelle</td><td>92/200</td><td>2.09</td><td>1.20e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>28/200</td><td>4.70</td><td>2.13e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>28/200</td><td>4.70</td><td>2.13e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0070013</td><td>intracellular organelle lumen</td><td>18/200</td><td>6.64</td><td>4.21e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043233</td><td>organelle lumen</td><td>18/200</td><td>6.62</td><td>4.37e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0031981</td><td>nuclear lumen</td><td>17/200</td><td>7.03</td><td>5.21e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>42/200</td><td>2.93</td><td>6.56e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>42/200</td><td>2.93</td><td>6.74e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044428</td><td>nuclear part</td><td>19/200</td><td>5.71</td><td>1.88e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0005730</td><td>nucleolus</td><td>14/200</td><td>8.17</td><td>2.42e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>15/200</td><td>4.30</td><td>5.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>11/200</td><td>4.29</td><td>1.17e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>118/200</td><td>1.29</td><td>6.19e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031967</td><td>organelle envelope</td><td>13/200</td><td>3.12</td><td>8.62e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0031975</td><td>envelope</td><td>13/200</td><td>3.12</td><td>8.62e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005829</td><td>cytosol</td><td>12/200</td><td>2.90</td><td>2.94e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0009536</td><td>plastid</td><td>32/200</td><td>1.73</td><td>7.66e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=plastid">4.00E-05</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005634</td><td>nucleus</td><td>28/200</td><td>1.79</td><td>9.33e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0000166</td><td>nucleotide binding</td><td>32/200</td><td>2.42</td><td>1.05e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0032555</td><td>purine ribonucleotide binding</td><td>26/200</td><td>2.65</td><td>1.94e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0032553</td><td>ribonucleotide binding</td><td>26/200</td><td>2.65</td><td>1.94e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0017076</td><td>purine nucleotide binding</td><td>26/200</td><td>2.50</td><td>5.46e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0003723</td><td>RNA binding</td><td>20/200</td><td>2.88</td><td>7.12e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=binding">1.00E-172</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>10/200</td><td>4.62</td><td>1.29e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0030554</td><td>adenyl nucleotide binding</td><td>22/200</td><td>2.43</td><td>4.07e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0001883</td><td>purine nucleoside binding</td><td>22/200</td><td>2.43</td><td>4.07e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0001882</td><td>nucleoside binding</td><td>22/200</td><td>2.43</td><td>4.23e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016818</td><td>hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides</td><td>14/200</td><td>3.15</td><td>4.63e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016817</td><td>hydrolase activity, acting on acid anhydrides</td><td>14/200</td><td>3.12</td><td>5.15e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003676</td><td>nucleic acid binding</td><td>40/200</td><td>1.69</td><td>3.17e-04</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>170/200</td><td>1.98</td><td>1.01e-35</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>164/200</td><td>2.02</td><td>3.97e-34</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>152/200</td><td>2.00</td><td>1.39e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>167/200</td><td>1.77</td><td>1.99e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>167/200</td><td>1.77</td><td>1.99e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>165/200</td><td>1.79</td><td>2.02e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>170/200</td><td>1.73</td><td>3.62e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>170/200</td><td>1.73</td><td>3.62e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>156/200</td><td>1.89</td><td>4.26e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>169/200</td><td>1.73</td><td>1.03e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>168/200</td><td>1.74</td><td>1.04e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>164/200</td><td>1.78</td><td>2.11e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>161/200</td><td>1.79</td><td>9.86e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>155/200</td><td>1.84</td><td>4.09e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>158/200</td><td>1.80</td><td>4.26e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>170/200</td><td>1.66</td><td>1.45e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>171/200</td><td>1.63</td><td>4.68e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>157/200</td><td>1.78</td><td>5.15e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>146/200</td><td>1.89</td><td>1.08e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>170/200</td><td>1.63</td><td>1.11e-23</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>152/200</td><td>1.81</td><td>2.38e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>172/200</td><td>1.58</td><td>1.57e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>154/200</td><td>1.71</td><td>5.19e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>148/200</td><td>1.76</td><td>7.09e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>135/200</td><td>1.68</td><td>1.46e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>131/200</td><td>1.69</td><td>6.47e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>126/200</td><td>1.72</td><td>1.21e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>109/200</td><td>1.31</td><td>7.49e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>48/200</td><td>1.48</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>48/200</td><td>1.48</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>166/200</td><td>2.09</td><td>3.15e-37</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>169/200</td><td>2.04</td><td>3.58e-37</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>168/200</td><td>2.04</td><td>9.06e-37</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>165/200</td><td>2.01</td><td>2.10e-34</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>170/200</td><td>1.88</td><td>1.74e-32</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>169/200</td><td>1.88</td><td>6.47e-32</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>169/200</td><td>1.71</td><td>3.75e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>156/200</td><td>1.84</td><td>1.40e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>155/200</td><td>1.84</td><td>2.86e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>155/200</td><td>1.84</td><td>2.94e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>148/200</td><td>1.92</td><td>3.10e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>148/200</td><td>1.92</td><td>3.30e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>169/200</td><td>1.66</td><td>3.21e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>164/200</td><td>1.69</td><td>1.48e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>169/200</td><td>1.61</td><td>1.51e-22</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr002885</td><td>-</td><td>33/200</td><td>11.77</td><td>1.02e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pentatricopeptide</td><td>-</td><td>33/200</td><td>11.36</td><td>3.31e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>33/200</td><td>6.02</td><td>1.70e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>repeat</td><td>-</td><td>45/200</td><td>3.47</td><td>3.48e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>processing</td><td>-</td><td>14/200</td><td>9.86</td><td>1.71e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nucleolus</td><td>-</td><td>13/200</td><td>9.56</td><td>1.16e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>mitochondrial</td><td>-</td><td>14/200</td><td>6.21</td><td>1.02e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>15/200</td><td>4.97</td><td>7.62e-08</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=ribosomal">4.00E-05</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>embryonic</td><td>-</td><td>12/200</td><td>5.59</td><td>2.95e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>motif</td><td>-</td><td>18/200</td><td>3.70</td><td>5.00e-07</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=motif">0</a></td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>13/200</td><td>4.92</td><td>5.05e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>helicase</td><td>-</td><td>10/200</td><td>6.42</td><td>5.49e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>defective</td><td>-</td><td>12/200</td><td>4.90</td><td>1.28e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nucleotide</td><td>-</td><td>20/200</td><td>3.14</td><td>1.87e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ending</td><td>-</td><td>10/200</td><td>5.62</td><td>2.02e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>21/200</td><td>3.02</td><td>2.05e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>containing</td><td>-</td><td>36/200</td><td>2.16</td><td>3.50e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=containing">0</a></td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>dormancy</td><td>-</td><td>10/200</td><td>5.28</td><td>3.67e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>chloroplast</td><td>-</td><td>35/200</td><td>1.98</td><td>3.10e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=chloroplast">4.00E-05</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleic</td><td>-</td><td>18/200</td><td>2.75</td><td>3.43e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>small</td><td>-</td><td>13/200</td><td>3.23</td><td>6.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>10/200</td><td>3.57</td><td>1.32e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>translation</td><td>-</td><td>14/200</td><td>2.83</td><td>1.52e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nuclear</td><td>-</td><td>10/200</td><td>3.25</td><td>2.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>16/200</td><td>2.29</td><td>6.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>structural</td><td>-</td><td>10/200</td><td>2.85</td><td>8.66e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>16/200</td><td>2.18</td><td>1.18e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>superfamily</td><td>-</td><td>10/200</td><td>2.64</td><td>1.61e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>25/200</td><td>1.73</td><td>2.63e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G29580&keyword=region">4.00E-07</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>29/200</td><td>1.50</td><td>9.96e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
0.70160500000000003418
with_AGI_gene